protocols

Here you can find a set of lab analysis protocols.

RNA-sequencing

• Analyzing RNA-seq data with the “Tuxedo” tools
• eQTL analysis with Ballgown
• Exon differential expression analysis from BigWig files
• Creating gene-level count matrices from BigWig files

Package development

• Routinely testing your R package with Travis
• Leek group guide to R packages

Analyzing data

• Repositories at leekgroup

Submitting protocols

• How to submit a new protocol

If you are a member at Leek group and want to contribute a template, please check how to submit a new protocol. Basically, fork the repository, copy protocol template to a new directory, modify it to your liking, update this page, and submit a pull request.

Date this page was last modified: 2015-07-22 12:42:04.