Protocol template

This protocol template was contributed by L. Collado-Torres.

Overview

TODO list:

Check the Markdown basics so you'll be familiar with the markdown syntax.
Change the title.
Choose your favorite HTML format. See http://rmarkdown.rstudio.com/html_document_format.html for details.
Specify your name as the contributor and link to your webpage or GitHub profile.
If your template includes R code, include the session information using devtools::session_info(). This is specially important if you have any packages installed from GitHub. You might want to use options(width = 120) before devtools::session_info().
Use render.R to render your file. This will create the HTML file.

References

Citations made with knitcitations (Boettiger, 2015).

[1] C. Boettiger. knitcitations: Citations for Knitr Markdown Files. R package version 1.0.6. 2015. URL: http://CRAN.R-project.org/package=knitcitations.

R information (delete this if no R code was used)

## Session info -----------------------------------------------------------------------------------------------------------

##  setting  value                                      
##  version  R version 3.2.0 Patched (2015-05-18 r68382)
##  system   x86_64, darwin10.8.0                       
##  ui       AQUA                                       
##  language (EN)                                       
##  collate  en_US.UTF-8                                
##  tz       America/New_York

## Packages ---------------------------------------------------------------------------------------------------------------

##  package        * version  date       source                                   
##  bibtex           0.4.0    2014-12-31 CRAN (R 3.2.0)                           
##  bitops           1.0-6    2013-08-17 CRAN (R 3.2.0)                           
##  curl             0.8      2015-06-06 CRAN (R 3.2.0)                           
##  devtools       * 1.8.0    2015-05-09 CRAN (R 3.2.0)                           
##  digest           0.6.8    2014-12-31 CRAN (R 3.2.0)                           
##  evaluate         0.7      2015-04-21 CRAN (R 3.2.0)                           
##  formatR          1.2      2015-04-21 CRAN (R 3.2.0)                           
##  git2r            0.10.1   2015-05-07 CRAN (R 3.2.0)                           
##  htmltools        0.2.6    2014-09-08 CRAN (R 3.2.0)                           
##  httr             0.6.1    2015-01-01 CRAN (R 3.2.0)                           
##  knitcitations  * 1.0.6    2015-05-26 CRAN (R 3.2.0)                           
##  knitr            1.10.5   2015-05-06 CRAN (R 3.2.0)                           
##  knitrBootstrap   1.0.0    2015-06-09 Github (jimhester/knitrBootstrap@76c41f0)
##  lubridate        1.3.3    2013-12-31 CRAN (R 3.2.0)                           
##  magrittr         1.5      2014-11-22 CRAN (R 3.2.0)                           
##  markdown         0.7.7    2015-04-22 CRAN (R 3.2.0)                           
##  memoise          0.2.1    2014-04-22 CRAN (R 3.2.0)                           
##  plyr             1.8.3    2015-06-12 CRAN (R 3.2.0)                           
##  Rcpp             0.11.6   2015-05-01 CRAN (R 3.2.0)                           
##  RCurl            1.95-4.6 2015-04-24 CRAN (R 3.2.0)                           
##  RefManageR       0.8.63   2015-06-09 CRAN (R 3.2.0)                           
##  RJSONIO          1.3-0    2014-07-28 CRAN (R 3.2.0)                           
##  rmarkdown      * 0.7      2015-06-13 CRAN (R 3.2.0)                           
##  rversions        1.0.1    2015-06-06 CRAN (R 3.2.0)                           
##  stringi          0.4-1    2014-12-14 CRAN (R 3.2.0)                           
##  stringr          1.0.0    2015-04-30 CRAN (R 3.2.0)                           
##  XML              3.98-1.2 2015-05-31 CRAN (R 3.2.0)                           
##  xml2             0.1.1    2015-06-02 CRAN (R 3.2.0)                           
##  yaml             2.1.13   2014-06-12 CRAN (R 3.2.0)

Date this protocol was last modified: 2015-06-22 15:32:07.